Scaffold TahiMoana_1085701

Overview

Basic Information

• Taxon OID: 3300001516
• Scaffold ID: TahiMoana_1085701
• Source Dataset Name: Hydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 727
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tahi Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location

• Location Name: Tahi Moana, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.064428
  • Long. (^o): -176.171974
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10857012	F007837	AGG	LVSGISVQPQISARNLTLKLNTVTNLKVDGNPLVINYPALYLSLAQSVLIDNQDATNPVTVRINRGVNTITINSSQNRAFNDAWIEQLDLTGASTNTQVTAQVSPLRQVRGLSQYETGVTN*