Scaffold TahiMoana_1006310

Overview

Basic Information

• Taxon OID: 3300001516
• Scaffold ID: TahiMoana_1006310
• Source Dataset Name: Hydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2873
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tahi Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location

• Location Name: Tahi Moana, ELSC, Pacific Ocean
• Coordinates
  • Lat. (^o): -20.064428
  • Long. (^o): -176.171974
  • Depth (m): 2230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y
F052279	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
TahiMoana_10063101	F052279	AGGA	MTDQQFLLVWILSFFLYFTIYTIWIPLKTQKKIESW
TahiMoana_10063103	F005551	N/A	MTLAASKSISRVKDGNIYGWSGSYTLSSSAVTLLSYTNPSYFYLTRITLGIDWSSISVGEVLSYSINVDGQALFVEKFVVNVDNTGDQPKMFEFIIPPNSTVKIQATESANNGSISCMLTGYRL*
TahiMoana_10063105	F014809	N/A	MVTTISRTFDSTPTDKEYFSLTDNMNSSNLGNIMVPGSSQRIVRVDCAFDVFNAKGAQVVCRLLGSDFSEQNFTIWGIAGDSADAACAQGYQTVPVSFPIGTANNIDLQIAIQVSGGGSMAASSGTVTLYFE*
TahiMoana_10063106	F005580	AGGA	MRKSIPHPSVTGMASGLAIASYLNAGKVLNGKFQAEGVIKDVTDGQLGQAFSTLAGNAISMIGTDMGRKTLVTAGLVAAAGAFARRQFPQLKLGGSKLYFRL*