NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KiloMoana_1091882

Scaffold KiloMoana_1091882


Overview

Basic Information
Taxon OID3300001515 Open in IMG/M
Scaffold IDKiloMoana_1091882 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokers
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)756
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Kilo Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location NameKilo Moana, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.064428Long. (o)-176.171974Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005148Metagenome / Metatranscriptome410Y
F009404Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
KiloMoana_10918821F009404N/AMLKKKQSRRSIMSNEIEEITPKGEALVKYCAICGVEFDETVMTNRYFKCASC
KiloMoana_10918822F005148GGAGMKQKKYEDYLRRTLPEEEEVECPSCKQKFYDQFNLLSLSALKFCLLCANRNVKKETIKEKYHVE*

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