Scaffold KiloMoana_1005611

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KiloMoana_1005611

Scaffold KiloMoana_1005611

Overview

Basic Information
Taxon OID	3300001515 Open in IMG/M
Scaffold ID	KiloMoana_1005611 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokers
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1542
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Kilo Moana, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location Name	Kilo Moana, ELSC, Pacific Ocean
Coordinates	Lat. (^o)	-20.064428	Long. (^o)	-176.171974	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_10056112	F055296	N/A	MREMDTKLRSFQVENMAKYDKFREIQQSRNKKIGQRLNELIDKEVKEADPQFKELTAVRSKDAPDIIVPNPFVLDQFHSLPKWEEYLRTLTKKEHQELYLHLIALKEITKSFEDYRLD*

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