Scaffold JGI12361J15250_1001819

Overview

Basic Information

• Taxon OID: 3300001475
• Scaffold ID: JGI12361J15250_1001819
• Source Dataset Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN102
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002774	Metagenome / Metatranscriptome	531	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12361J15250_10018192	F002774	N/A	MQTRSLILLLGAVAVVASGACARDDDRSTTRVQVIDSAYAQSWEPMEDTGTVYRIAVVSRLGADTVRNVVPPAPIIVGDSLVIGLLQLSEDSSTPQRQIFTLRLGQHRVETTPLPEDVWPSYQDVLVSPDGRYLAYVGEDTMPANPGTYGIVRDLRTGAIVVKGPGGGGCDCDDDYNHARWFPPDSFEIAVAHRNSNGGWQRLSGKASASRVHVDTLSDEPDWH*