NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20161J15289_1000872

Scaffold JGI20161J15289_1000872


Overview

Basic Information
Taxon OID3300001474 Open in IMG/M
Scaffold IDJGI20161J15289_1000872 Open in IMG/M
Source Dataset NameCubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Kalotermitidae → Cryptotermitinae → Cryptotermes → Cryptotermes secundus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019385Metagenome230Y
F096180Metagenome105N

Sequences

Protein IDFamilyRBSSequence
JGI20161J15289_10008721F096180GAGGVLFLSCKANARVKLAKSGHGPHLFRIIVFCVVLVIVLCYRLYAVLLL
JGI20161J15289_10008723F019385N/AKRAAKFANNIDESGWETLAQRRLIARICALFKAYTGGRAWKAIGDRLLKPCYLGRGDHNWKIRTRKQKTDVGKYSFVNRTIRNWNQLPASLLASFPCNLNTFRKKVKNVVTSKGIQGGVSVNK*

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