Scaffold JGI24004J15324_10074180

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10074180
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022311	Metagenome	215	Y
F032077	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100741802	F022311	AGGAG	MARSLIDGSYDPIYDQIRGILGEHFENYCFIVMDDRGELFYDYNHLPAGRMLLHEMQLEISDDXIEIEWEFESDXDELDDDDAVD*
JGI24004J15324_100741803	F032077	N/A	EQEKTAKNSLPNNNPEKWLTAASLFLSGASVHEVKKTMTLNHHIAKRINGIVKASDDARVFRHERAIQLASTIDEINSIGEKIAASYLDGSPEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDSLPEAEVIDIGEDG*