Scaffold JGI24004J15324_10046554

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10046554
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1313
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100465541	F022198	N/A	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIARGKCLAIHEN
JGI24004J15324_100465543	F009110	AGAAGG	MTGSMXXSAXXYMESLKDKVPPADEDDIIVKHGTPHMRTLGIDPHEAVKAVGKLQAQGVMVKDACPQVGISLSQYYKTKKGITNGK*
JGI24004J15324_100465544	F030097	N/A	MKALDIAGTQTKVSSCMGFVASGAARDAYRRLLTASTVGQSKGEQRKSVXSRTTKEGVKK
JGI24004J15324_100465545	F044196	N/A	MEDITNKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQLNK*
JGI24004J15324_100465546	F006684	N/A	EQALTRHPLNHTMNKIIISYIIASALALGLLNHAINKAQGNIETLAEVLVHHADTLEDHRSVLLQMIDDRALPYM*