Scaffold JGI24004J15324_10027542

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10027542
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1874
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100275422	F004990	GGA	MYGDPKKKCCACDKGADLREGTKYFCCDHYAXNILGKTMEQIEKELKGXLNELLAL*
JGI24004J15324_100275424	F001839	AGGA	VKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMIRTGIKTKATLIRYLDRLTLFGLLARKQIDNGTCHYVFDKPTMQEYILHNTNKRRKISLSKNRHNRNLNAALSSPNVINMGKVIK*
JGI24004J15324_100275425	F011253	AGGGGG	MKDRKLEINNIIKNFVKNKSIPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEADDTK*
JGI24004J15324_100275426	F004629	AGGA	MIPSKLTLEELDNYFQTATYVERYMPSPLNMKNKRTEMFTLIDRLYGIGKDKDSYKDETKPRMRIRLNGEQLQIYEFCILLMVKGSEKDRDIIGLRHFPFKRSFRELRKFFMPDSHEKVRQAYYKALLELLNIYNKHGYKYICK*