Scaffold JGI24004J15324_10025771

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10025771
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1952
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F070575	Metagenome	123	N
F077807	Metagenome	117	Y
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100257711	F019393	N/A	MYKEIETYKDVDSFIEAHDGLWHMLGSKYKKLDEETVVIDNTTWKLKKGNMSCLK*
JGI24004J15324_100257712	F083382	AGGA	MPKVDRDILVSVDDAGDVAKKEYESYIKQQEEVVDDLDNQEYSEAEQYDYKGR*
JGI24004J15324_100257713	F077807	AGGA	MSKTGFTDWLHKEIKLQQQQQRKIIMAKNLKEQQHGAVIIDQAQKKLILDLFNAGREFNDDYRESGIKYMRVWTIEQLTDLIDDMKDAFGXVPKKSSEKDFNGEIGSPMFWTDHVWSDDPRAWXRKD*
JGI24004J15324_100257714	F070575	AGGA	MXKNLWDKEYNRVYRELVRDYLDDGYDLAEAKYNAKKDAKEVMQDQLDFVEELYDNTLNDLD*