Scaffold JGI24004J15324_10012985

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10012985
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2956
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015153	Metagenome / Metatranscriptome	257	Y
F033251	Metagenome	178	N
F067196	Metagenome	126	N
F082525	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100129855	F067196	AGGA	MPKFNKIEEKQKFFRNAMRKLDTGLPEEASPDLIKFFVLHVITAYEQEDCWDDIKGFVDFALKGMSEFDSARQAVEDADNLLEAIKNSKDK*
JGI24004J15324_100129856	F033251	AGAAGG	MANKRKSSKDFPVDRTFSTWTAKEIDQLLEYKATGFKHNEIGEFMGRSTKSVNVKLSRIRNSVNEANNPVDNLTPFQKDLDETLFGRVSPDDKPKKARGPYKPRATKLSLTPQPKAADAFNVPKKPVYVAIVLVLVIVAWYLGSMS*
JGI24004J15324_100129857	F082525	GAGG	MDYKINSGVPIPDVVLGRKRGKGKWQVLLSSMSNGDCVDIPNESYNSMYVAASRLGIDLLSRREADGLADGFVRIWRVSDDD*
JGI24004J15324_100129859	F015153	N/A	ADGDACVYRGRHGSCEYDGGLGELSGQMCAVGVFIADEHYSPDLEGQGIRRDRSVANAVARSWGQDYLTLDQISLLADLQDAHDETSRGSSLIPDHNWSKNIVASLDKVATKNHLRFDPNGASV*