NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10012985

Scaffold JGI24004J15324_10012985


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10012985 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2956
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015153Metagenome / Metatranscriptome257Y
F033251Metagenome178N
F067196Metagenome126N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_100129855F067196AGGAMPKFNKIEEKQKFFRNAMRKLDTGLPEEASPDLIKFFVLHVITAYEQEDCWDDIKGFVDFALKGMSEFDSARQAVEDADNLLEAIKNSKDK*
JGI24004J15324_100129856F033251AGAAGGMANKRKSSKDFPVDRTFSTWTAKEIDQLLEYKATGFKHNEIGEFMGRSTKSVNVKLSRIRNSVNEANNPVDNLTPFQKDLDETLFGRVSPDDKPKKARGPYKPRATKLSLTPQPKAADAFNVPKKPVYVAIVLVLVIVAWYLGSMS*
JGI24004J15324_100129857F082525GAGGMDYKINSGVPIPDVVLGRKRGKGKWQVLLSSMSNGDCVDIPNESYNSMYVAASRLGIDLLSRREADGLADGFVRIWRVSDDD*
JGI24004J15324_100129859F015153N/AADGDACVYRGRHGSCEYDGGLGELSGQMCAVGVFIADEHYSPDLEGQGIRRDRSVANAVARSWGQDYLTLDQISLLADLQDAHDETSRGSSLIPDHNWSKNIVASLDKVATKNHLRFDPNGASV*

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