Scaffold JGI24004J15324_10007599

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10007599
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4032
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F023484	Metagenome	210	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_1000759911	F098218	GAG	MVMTSFSSWSKRPEDMRAAAKARAVAALHKKHSKGLTQLERAYLHALKTGRLDVDD*
JGI24004J15324_100075996	F019754	N/A	MNHXXDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLEDLIAEELWLESLPSVPTPAELNPNLK*
JGI24004J15324_100075997	F020110	N/A	MSTHLEVKARLSYARAMLERDIPTNTVATLISSKFFVCRSTAYNDIQAAQAEMDLSDDGPSLEEASEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFA*
JGI24004J15324_100075998	F023484	N/A	MDTEPNPPHLLPNALMNINTKSGGLLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDGDEVAKCKTFIRNHS*