Scaffold JGI24004J15324_10004242

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10004242
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5575
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018643	Metagenome	234	Y
F019556	Metagenome	229	Y
F037809	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_1000424210	F037809	AGAAGG	MIKKLLVGFALLTLVACSSAEANDVADDGKCLDDIKHYNHLVKTTGASDSDKASAVVERDKGSEAWAQGDKEACETAYQAAWALID*
JGI24004J15324_1000424212	F018643	AGGAG	MQSIILKPINAIQYTPSNPTLKSLFTQVQHLVSHQQFDLVVDLLNRARHNPAYAKCRVNWDHLIAHHSQYI*
JGI24004J15324_1000424213	F019556	N/A	MLVRTVILYVAMTVCAVAFHEHTYAVWELRELLMERQLNLWELLEQLKYVTEDQRPRVYSDIQHIKQEINSIIDQLLQHDRSQHP*