Scaffold JGI24004J15324_10003594

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10003594
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6056
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019561	Metagenome	229	Y
F031695	Metagenome	182	Y
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100035941	F031695	GAGG	MINFTDEWMCDGCGNIFDKTELVDSIQLPYYACQDCEA
JGI24004J15324_1000359411	F050005	AGGAGG	MYNKTNYPLYHEFKLMKFGNVLLNTNVDDILDQEIEETTIIINKLKDINQFVEA*
JGI24004J15324_100035945	F019561	GGA	MTDKFTRPILRDLRISLEDILRAESKSDKIPFELTLGNCSFEXDKATFKLVVTFKGNSVQDIERKKQKEDLEYYAKYYDLDLNRKHSRYTLIGYKVKSRKLPWIVSDNQKKGEYIISDDQAKKLFGKLDVDTFLKGQREAQANG*