Scaffold JGI24004J15324_10003306

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24004J15324_10003306

Scaffold JGI24004J15324_10003306

Overview

Basic Information
Taxon OID	3300001472 Open in IMG/M
Scaffold ID	JGI24004J15324_10003306 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6320
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F022999	Metagenome	212	N
F030599	Metagenome	185	Y
F048640	Metagenome	148	N
F052260	Metagenome / Metatranscriptome	143	N
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100033061	F052260	N/A	MFVILATKPLNDGTKGFRFNFFGKKGIIRQRKLQSNGIKFTKGDCMNAYHFGKTTIYTEQSNNKTTARKFHHVAG*
JGI24004J15324_1000330610	F048640	AGGAG	MQPQGLHAHARIKYTPTYIQKQLECRLFGKTFRSVAEAARHYGLAPSTAYEYHHQRLHRETFPNRKRWNTWK*
JGI24004J15324_1000330612	F053632	AGGAG	MKLYKNNDGVWSGTQLDARKVCGKDYSTVDVPVDKPGLLKFLNLNKVGSSYTSNDKEFEPVYAPDTDLNSKAMSYFRWGYDKLCSGQYDDGKELIRKALLYKKTHDIHEGE*
JGI24004J15324_1000330615	F022999	AGAAGG	MMWILVWMQLVTSQGVEHYQLDIFTKEADCQEALTKAVVLINSSSEMLACLEVDTRQ*
JGI24004J15324_1000330617	F030599	AGGAG	MRLAIVIDIDGDIMYVPEDSSVFENYPKPKLFDNMKDAEEECAKWNTGIIVDFNTNKSVDKVSSYNDIRPFNSDERNRATERRLKNNGQ*
JGI24004J15324_100033066	F004493	GGAG	MLKNIATNKALGFTNNEWNQLIEGNGLLIMWFIEWNNEEQDQSNILDFFKLKYNQSAGGDPWPMGGKVSLDGKYVSDGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHIVRMD*

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