Scaffold JGI24004J15324_10001820

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10001820
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8479
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F017045	Metagenome / Metatranscriptome	243	Y
F021402	Metagenome	219	N
F090862	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_1000182012	F016292	N/A	MDNRIRKIGKCYTQFNLKHSSKSQNTIPDDIRFRNYIVMSPKEKMNMPKNCSFEGGTMEHELVQMHYTENKTLEEAKASEIIQDRINNYSPVDEKDKIKFEHIVERLIPVAQNHLDNIGELPKQKWKAELEYTHWDDRIQTYFLSYVDXIGETHFGDIKNVFGTLIKTKSGYSYTKKKCPVVPFHSDCLQIALYQKLLPKLKPFLTYASCSDKRIFTPENCTELRPESLEHYYDELVLYQRCWEKKLELADGNIETLALLCKPDFSELRKNSFWWKGTDPAVVKRFKGYYGF*
JGI24004J15324_1000182019	F017045	GGA	MAKSNSLIRRYAKLQKLHSEIMQKPKNNARQCVHSLKAFKSYIKTYRQIIGVENGDATFIYTQL*
JGI24004J15324_100018204	F021402	GGAGG	MITTKLTTDELDRFLQISSFCDSKMPKVKAKSLPTMYKVIENAIGIGNDKESLKNLDKAPGQLRITLTSRQITIYDFVLLVMLDAKPETRELIYLRNFPHRKSLRLMKRMYLDWSHEKIRYKYHKALLEVCRYANKNLKKYLTS*
JGI24004J15324_100018205	F090862	AGG	MTNYVDPKLVAKALARVTKSSNVYYSSAVKKIKKNRKQYYQNKETKTLQKSLSKDRFNTYLEELYKNDND*