Scaffold JGI24004J15324_10000817

Overview

Basic Information

• Taxon OID: 3300001472
• Scaffold ID: JGI24004J15324_10000817
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12524
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -134.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017335	Metagenome / Metatranscriptome	241	Y
F056620	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100008171	F017335	N/A	MNIKSLTLKNKLTVERTGEQYFDLTAPSFRYKTELGIKALHYIKQDQVGRMDKVSLQYFGKSDYVDALCIVNNIFNPFSLNEGDVIIIPNLSDLSAVYSRPNAASRPNPVLEDYVNTDRQSEKDQARVQRLVQKAKTKESGVDTPIPP
JGI24004J15324_100008173	F056620	N/A	MNFRHVFENRARKMILKADDYKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIREISARPFFKGPLSLDSIKEFDARYKKGWLDKFEKGDLNIDKYLDSLS*