Scaffold JGI24004J15324

Basic Information
Taxon OID	3300001472 Open in IMG/M
Scaffold ID	JGI24004J15324_10000293 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001472 Open in IMG/M

Scaffold ID

JGI24004J15324_10000293 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-32

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20107
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

20107

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (69.23%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.2833

Long. (^o)

-134.6666

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016224	Metagenome	249	Y
F037478	Metagenome	168	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24004J15324_100002934	F016224	N/A	MFNSYIKSFDSAASPAGRSMLDEIMEESTVRAGINGTVDVMEAMALKGEGTDQFLDFSINKVKTGNNIFDATKIKFSPKDTANFNINKFMRNLGISDITDDVAKSKMTEILGGPAQAKEFEKFLTYMKAISDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAINPFAPALFILLGRRAGQILSDPVAMRAFNDALMPDEQIKLLMGQKVGNGVPGVLGIGRRYFKGRDIQTAANVLQSPGVVGRLGLTQKREAFARLVNYLREGDADIPRVDPKTVTPEEITERMGQLQTSVPSPNYNKETVPKNTFETLFAQDYSGTSGDLQTDNNAVTMLSTATQNEAMVNAEEAPIEQEEKMIMADLQLEDPVAQAPTAPVPPATGQVDPQKFAALFPDDNSGQAIANRGVRRG*
JGI24004J15324_100002935	F037478	GGA	MATISEIQKAIDTNTFDPSKYTRQQRQLIDAAIDKGLLTGPTTSELTKKRSGAAREVATMDEAVKNPIGVRLQQTGSSLDGRSEAVLAGDLIGSITPYVMMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFSDKLTAKLPGRFKLLGGLTKLIAKVADPTIGRVLASPLGKAEMMSVLGGTAGAGAGSVTYDMLNETVGIAAMDAIASDLENMSPKEVNTDMMANAADSMFTALAWNAGAATLTPVITKSLGKIGRLAIGAKSKDAKELVNIARDRGGLPVPMVMTAQEGVGLLGGFANKFFKVLGIMPFINGIGKEALQGAEQAAGKNYLNNDVLKYGPLVKTGMLSATIWKQADQAXKQNSNLINSSYKAFDTLADTIGNPKVIPTSHVKFMAKNYVEELAMKYPGLRGYAQDALGDIDMKEIAKLQGTGDPLALFFRYMNGIDDFVTPKQYKGMMETLNRAISTTAYDNIRPTLWSIREALENDLNSFGGAITKETFLKDDAVKAAYETLKKTNPAAAEADMALKISESTKLKDKLYGANDTFSTLMNFYQNANLTKVFRDYNATTFTNKALAGIGGMQKKKAQRFFNDVANDVFTRGDTDAVLQLKQLLGATKIASRKNPRKRYRDYKGRWRSII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24004J15324_10000293

Overview

Ecosystem & Geography

Associated Families

Sequences