Scaffold JGI12712J15308_10002619

Overview

Basic Information

• Taxon OID: 3300001471
• Scaffold ID: JGI12712J15308_10002619
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5319
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F037354	Metagenome / Metatranscriptome	168	Y
F063894	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12712J15308_100026194	F063894	GGAGG	MVANALLFTIAILLAYGFWLLDELKFMARYKAVVFHAYGPWILAFGAVLFVNLFGLALAVSRRLLLKNTGRKLSHLDKQFHVGHVDMPLPLNDGEAD*
JGI12712J15308_100026197	F000626	AGGAG	MPIVKKAPEIMVREVRLEQPVNELLEDYARFIESGPDHVINAVLKKVLWRDADYRKWRGERRAAQPGSDKPQPVDGRGRS*
JGI12712J15308_100026198	F037354	GGA	MQRILQSRAFLAAVLAMGTGVFLFYTRTFPDDQVFLRVIAVRAPQAFLTFKYLYYTFLFT