Scaffold JGI12712J15308_10000014

Overview

Basic Information

• Taxon OID: 3300001471
• Scaffold ID: JGI12712J15308_10000014
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46886
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (51.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007233	Metagenome / Metatranscriptome	355	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12712J15308_1000001410	F007233	GGAG	MATRKQEQQQRQLNLDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDDPVWRPKD*
JGI12712J15308_100000148	F037842	N/A	VKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKPRRVMRRVASR*
JGI12712J15308_100000149	F033134	AGGA	MKQEQQSNQLITFSSLHIEVLGPRELRNSQQAIRGVTDFLHGVELDVEKLLRERAEMSPILEGFRLRFG*