Scaffold JGI20162J15292_1000006

Overview

Basic Information

• Taxon OID: 3300001468
• Scaffold ID: JGI20162J15292_1000006
• Source Dataset Name: Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7844
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060415	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20162J15292_100000610	F060415	N/A	MSLLVIDFTYLEGRDGELLVKELAAVDSHRNRVSSYIFKKPYGWEEVPMFNARINEAIDHGCNWNDGDVLYSELETVLHREASSAVAIYCFGPLKTQFISGLLERTVIDIMQLGCPELADISLANISCTFACHNKSKHVCALRTAYSLAQWLNFYTLSVQYAKCPPQPAFH*