NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20168J15290_1015183

Scaffold JGI20168J15290_1015183


Overview

Basic Information
Taxon OID3300001466 Open in IMG/M
Scaffold IDJGI20168J15290_1015183 Open in IMG/M
Source Dataset NameNasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000357Metagenome1238Y

Sequences

Protein IDFamilyRBSSequence
JGI20168J15290_10151831F000357N/AMYQNFIIPYLYEIQHVLGDTSPIIRRLKLRWQPLLIHMGKVVGRVVGGRCQENCASAVLGS*

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