NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20168J15290_1012830

Scaffold JGI20168J15290_1012830


Overview

Basic Information
Taxon OID3300001466 Open in IMG/M
Scaffold IDJGI20168J15290_1012830 Open in IMG/M
Source Dataset NameNasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000030Metagenome5002Y
F030138Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
JGI20168J15290_10128301F000030GGAGMHFYRVSQEECATLREGVSYVKVYRYNPKHLCPKLNGYRDNGQRK
JGI20168J15290_10128302F030138N/AMNGVNNWLHNLAAPFFDEGLQKLVSRYDKCLNVDENYVEK*

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