Scaffold JGI12363J15224_100186

Overview

Basic Information

• Taxon OID: 3300001464
• Scaffold ID: JGI12363J15224_100186
• Source Dataset Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13729
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F002569	Metagenome / Metatranscriptome	547	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12363J15224_10018613	F000265	GGAG	MPETRGIQATEEVKAEWSLAYKHYLRAPGDRFDKKKDRTQRIDYVATEMKLTRKQAKRRIRNYEAWQRNIKKGIVTP*
JGI12363J15224_10018616	F002569	AGG	MKVLAQANSILSIQFPLARRRAPKYSLVKSMTSVPSTIDFMRVNNATVREGRAHRVWPPDVLRKFQTAEIITELQTQHYVLRDSSITRL*