NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12363J15224_100174

Scaffold JGI12363J15224_100174


Overview

Basic Information
Taxon OID3300001464 Open in IMG/M
Scaffold IDJGI12363J15224_100174 Open in IMG/M
Source Dataset NameForest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14326
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameBrowns Valley, California, USA
CoordinatesLat. (o)39.23550963Long. (o)-121.2836963Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033947Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
JGI12363J15224_1001749F033947N/AMLLMFITGATLTYAQGEKKPRTIADYQPRTLQELSNLLPEAFRTVLAERGVEGNKNLKQIVHGELFPSRVKVVYSGTQRPLVEDKRSVIIGWANKFAGMPEFYTVPYQTELLFTEADRKYWLAVHKDLLAQDWKQGETLELCVIKFGNVQIGDEFEPVLLVEKVIR*

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