Basic Information | |
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Taxon OID | 3300001464 Open in IMG/M |
Scaffold ID | JGI12363J15224_100174 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14326 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (52.63%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
Source Dataset Sampling Location | ||||||||
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Location Name | Browns Valley, California, USA | |||||||
Coordinates | Lat. (o) | 39.23550963 | Long. (o) | -121.2836963 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033947 | Metagenome | 176 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12363J15224_1001749 | F033947 | N/A | MLLMFITGATLTYAQGEKKPRTIADYQPRTLQELSNLLPEAFRTVLAERGVEGNKNLKQIVHGELFPSRVKVVYSGTQRPLVEDKRSVIIGWANKFAGMPEFYTVPYQTELLFTEADRKYWLAVHKDLLAQDWKQGETLELCVIKFGNVQIGDEFEPVLLVEKVIR* |
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