Scaffold JGI12363J15224

Basic Information
Taxon OID	3300001464 Open in IMG/M
Scaffold ID	JGI12363J15224_100067 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001464 Open in IMG/M

Scaffold ID

JGI12363J15224_100067 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24432
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (70.83%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24432

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (70.83%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Browns Valley, California, USA
Coordinates	Lat. (^o)	39.23550963	Long. (^o)	-121.2836963	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Browns Valley, California, USA

Coordinates

Lat. (^o)

39.23550963

Long. (^o)

-121.2836963

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003994	Metagenome	458	Y
F007997	Metagenome	341	Y
F011793	Metagenome	287	Y
F096846	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI12363J15224_10006710	F011793	GGAGG	MSNWRKIAKRSTVLCCVLLTVSIAARSQTRYPGPEARENNRSMDEYDRTLNRMKNDAKAATERRRSLFPQINEDFQRIQVIHNEIVRMLQPDKGLNYDRLADLTGDMKKRSARLRENLALPQPEKTDTPPTHSNAIDEARLKKSIANLHDVVVNFVANPLFKNLGVVDAKVVDAAGENLDEIIGISDEIKREAKSLSKTAKD*
JGI12363J15224_10006712	F007997	N/A	MRLRIERKHFSLRLALAVACVCVSALSTFASSAVVIRPEVSRSHREELIKRLRVITGWSSLSFDNNGSLRLGETQTSNGSESARLLLKQAIAGPNVIVLEDASSRTDVAFCRVVRARWLRDEQNKPPAFVVLIDFKDFQQLSGDAEARAAFDVGWGLLHELDHVVADSEDARDAKAVGECEDHINRMRLEVGLPVRVDYFFSRAYLKADSNFNARYVRLSFERETKRYWLVWDATTVGGLHDDSQRALVR*
JGI12363J15224_10006713	F003994	GAGG	MGQRRREREQNFLVQCSWCGSKIRDDKKEESNAVCLKCFYQILSNHLRAQKRTVYGEFVSDR*
JGI12363J15224_10006724	F096846	N/A	QSVRLLNDRTAYVAVSRARYDALIYTDSTQNLSEALNREINKTTAVEAVQGNEREVKRERDKLSQDPPATQQPQLPFDHDIKRIPTHVEPAQTQAASPAIESRNSIARATNETLIRTDSAQNLSESLNRSTNQPTALGATLDDDRELKRHRDKLTPDTLTSQPQRPSEHSLNQAPTRPNTAPTKAAELEIEGPEIDLGGLIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12363J15224_100067

Overview

Ecosystem & Geography

Associated Families

Sequences