Scaffold JGI24021J15306_10157656

Overview

Basic Information

• Taxon OID: 3300001463
• Scaffold ID: JGI24021J15306_10157656
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1146
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013591	Metagenome	270	Y
F052936	Metagenome	142	Y
F086287	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_101576561	F086287	N/A	SIYLKSRKFITAWFDNKCAATPCGTAKEYFAMNPISIYNVGEKLRK*
JGI24021J15306_101576563	F052936	N/A	MNNSEQIKDVFEKLEAQKNIDELKREIEELKYFNKVLSYKLSEIPDF*
JGI24021J15306_101576564	F013591	N/A	IFSKLKDFLSGFISKKQVVDTALNIARSAGQKAGQKAIDIASSNLTLKSQQISSKLVSSTPPLAPQGATPQKAQEVTTNLSNLIAGSGQRTIKIQDLVKGMNKQYIQ*