Scaffold JGI24021J15306_10150461

Overview

Basic Information

• Taxon OID: 3300001463
• Scaffold ID: JGI24021J15306_10150461
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1234
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Euteleosteomorpha → Neoteleostei → Eurypterygia → Ctenosquamata → Acanthomorphata → Euacanthomorphacea → Percomorphaceae → Syngnathiaria → Syngnathiformes → Syngnathoidei → Syngnathidae → Hippocampinae → Hippocampus → Hippocampus comes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031692	Metagenome	182	Y
F038461	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_101504613	F031692	AGG	MILIIFMVNPSEFAYFFFKSGDIHEGRQRLLVPSPPVGIRIEQFVTNCGGERVPCNHLYVSSVTFMSETV*
JGI24021J15306_101504614	F038461	N/A	MYSFFYMLSHSIDWHFLDVVYNILNMQRYVKSVAGQTCSFSAKAAKGGSQYLCLNENVPLLRHSQFYPSDMASLA*