NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24021J15306_10061397

Scaffold JGI24021J15306_10061397


Overview

Basic Information
Taxon OID3300001463 Open in IMG/M
Scaffold IDJGI24021J15306_10061397 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3563
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025610Metagenome201Y
F061343Metagenome132N
F067192Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
JGI24021J15306_100613973F061343N/AMDLSQFCQVLRNVTRKEENKENVPPTEQSATTEQPIQSNDNRTPTLWGWIHQQIPLIQDAVIKFSTNHSLVNDHKFWEIDSDTYVVENDYINTFLVKCTLHQAIFLNRFQIPAITILTPSSDEQFKLLFRISTFLAKYEDLSPLIFHLQIQPETAPKPSHIALETHKQIMSMILTHAPMLPKSVLTKMREFLTVTEAIMEKKSENNAPTNQET*
JGI24021J15306_100613974F067192N/AMETDSPISEPSTKKPKTAMKKYPSLYVKLHFTGSFDIQQAQSIILSEPSMRKDATPLLYKQMAFNLSFLAIADDEYIMINKTIREILDLKPQPIPYLQLFVQNRDLRRVMLNRTSMLVSSFAELPPYCVGIRIKSHKPKEDYWQKHHVTALRSVVWNFILNELEPIPPHVRMFLSMELKFMATQELPTSPVTSSQSQTIAHDKPKKLQVTILA*
JGI24021J15306_100613976F025610N/AMNIIKRLRNRETINTNQEFAHTATILESTIGQPDIVVPIREAIQPTTISRLLRETEYFFQRHDLPRIFGFDKIKLFHIKDGNFKHNSRYILIYGYKNNKDNLSFNNLHKNDFKTDLLLQVGTKCER*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.