Scaffold JGI24021J15306_10052002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24021J15306_10052002

Scaffold JGI24021J15306_10052002

Overview

Basic Information
Taxon OID	3300001463 Open in IMG/M
Scaffold ID	JGI24021J15306_10052002 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4143
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028033	Metagenome	193	Y
F068219	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_100520026	F068219	N/A	MKSFFNSLYTITKPQKKLKATSNAVDLAMDLLLFSRAIKNRGESAYHQFKITNLRQHHGHQ*
JGI24021J15306_100520027	F028033	N/A	MPNLSFHGWRELSTGLQLQQKVQNHTATSNCWLTRRQVAAKCTAVIPPI

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