Scaffold JGI24021J15306_10024473

Overview

Basic Information

• Taxon OID: 3300001463
• Scaffold ID: JGI24021J15306_10024473
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7238
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025610	Metagenome	201	Y
F042618	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_1002447310	F025610	N/A	MNIVNRLRCRETMNTKQQFAHTATTLNSIMGHPDIVVPIREAVQPTTTSRLLRETEYFSRLHGLPLIFGFKHLKIFHVKNNNFKNNSRYILIYGYNGDKSKLDFNRSHKIDFMTDVLLQVGTKCV*
JGI24021J15306_100244739	F042618	N/A	MAKFGKFSPSRSHPDLNMAMMSSPILPQRQRDPRVCDPWNLQERQTSSLPPFPEEYARQSSVQPAPYPQFVGTPDTGEAITPIAKSVPLRPAKLFFSPHPNKAKAMPNNQQTDLRSHCLMFPTHLALQSNPIQIEDMQTLFASPILQENLHYLLMDHSLDEAKISETLKYLGIPKCLFVQYINRVYPQHFYTILNNLNGSTQ*