Scaffold JGI24021J15306_10017941

Overview

Basic Information

• Taxon OID: 3300001463
• Scaffold ID: JGI24021J15306_10017941
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8733
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074136	Metagenome	120	Y
F102041	Metagenome	102	Y
F106075	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24021J15306_1001794111	F106075	N/A	MDLQGTLGNSQIWLGTPPVVLQFILVFFHFMVCNCLFAKNIRSHSDIGKMKETFNYMCL*
JGI24021J15306_1001794115	F102041	GGA	VPELCWASSLIFVGNDPSFTDEGGGAELRQLDITGVDAAKIQLELIEFQ*
JGI24021J15306_100179412	F074136	GAG	MQELRKSQNHDLRADPAWSVNSGKMESNPGDFPGFRRLKAAANSSGLKGSEIL*