Scaffold JGI24003J15210_10140166

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24003J15210_10140166

Scaffold JGI24003J15210_10140166

Overview

Basic Information
Taxon OID	3300001460 Open in IMG/M
Scaffold ID	JGI24003J15210_10140166 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	632
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004734	Metagenome	426	Y
F036973	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_101401661	F004734	GGAG	MIKYFTFMVLSYFVQGEQVTHNIVFPSYDACSYSKDAMYNIMEKHHDTVMISCKGTQVASNKL
JGI24003J15210_101401662	F036973	AGGA	MIDDRICIYYVADRVQEIRDGEAKADEFLRELNHNIGVNARIKRNDPDAFVADLPPIDPPRKKGRKKQ*

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