Scaffold JGI24003J15210_10102641

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI24003J15210_10102641

Scaffold JGI24003J15210_10102641

Overview

Basic Information
Taxon OID	3300001460 Open in IMG/M
Scaffold ID	JGI24003J15210_10102641 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	815
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052889	Metagenome	142	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_101026413	F052889	AGGAGG	MQSKTDHIYSTAIAYACYKSGAKRVDDNLLKSMFRDLCLLSDEYAFDYKQELKEILKEG*
JGI24003J15210_101026414	F089429	N/A	KDINIYSIFSRTYKKKMFPFMDFGEIGRLKKVKTIRQVSNVYQFPIHQYYNQKRRVK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.