Scaffold JGI24003J15210_10040721

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10040721
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1615
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030153	Metagenome / Metatranscriptome	186	Y
F091971	Metagenome	107	N
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100407212	F091971	GGAG	MDKLNQLFEPSKQVGSDKKYRHIVKDQMIQGDELEVNGVRRSFWSNPNGTHSCHMWNVDKGKVIEQLTVDSFNGEDLQAFQLRTQDILWGV*
JGI24003J15210_100407213	F030153	GGGGG	MSLIVDFTNIQEDARDELNQYQETIGYYMMAIGMGEITQDNHLEVYARLVLLDATNVGVLAAKYINRPWISFRMVKLLIGAKFNIAFESKAKFSSRMMKCALRDVERLAAQESKEVA*
JGI24003J15210_100407214	F103914	AGGAGG	MYTADRTDLLDALASSMRDCIETEISSTDFTLEEYFRCSLIDRGVASTRSEMIARRMAEGNLEGLAYHVASCDPHYLKKLIQAEPRLIHMLLQNNKMSD