Scaffold JGI24003J15210_10038676

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10038676
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1676
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100386762	F004220	GGA	MVEKDKIDWCYYFKSIDRWIRVCTKGMNEGFSVFTKQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESNSGHTKMFHKENNQWKQL*
JGI24003J15210_100386763	F026714	AGGAG	MADKYKKLTIYVNEEQEKVLKDFDIMAIRKEQFPLLHYTVGLISKRLEETHNRVITDVDPNTCDQSTLHFNSKTIG*
JGI24003J15210_100386765	F056144	GGAGG	MQRLIYRGYDIVEYDTQWKVELDNKSIATFDKVEGVSGEASCMCEIDRIKREERKEVDANIQRVDAQVKLNSDVQKARNNGS*
JGI24003J15210_100386766	F018451	GAG	MAANKYIDVVSPNPNAVLPKDYKFNKIQHSPKVLQIVDGMLGFEFNGTYIVDPTLDETGRFPVSATTYYKISTKDRNRMIKHNIKI*