Scaffold JGI24003J15210_10033298

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10033298
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1859
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000499	Metagenome / Metatranscriptome	1074	Y
F100962	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100332984	F100962	AGGA	MATLKQKKKLIKTIKNPERYFKLDFSRYGGEVAMGTITKAQFEYWYDNDKFEEYMASVDFSDAEIQKGIPKRAQFDKPFYEYGDICHLSGPEFADGQTLTITEIDKDGNALQDDDGNYIEDQMVDFGEFEKKGVTVECSDTHSEDSKSCENLYYVFGQYFNKGGWYTTENIKTGPDGFNLKKMKIQYEDADGFKAFSCIEYDGETYDLEEDSTGKSSSFYVNCGDNI*
JGI24003J15210_100332985	F000499	N/A	CANQKIMQKEIYKEDYFGTLMSILVDESRRMLPTFNPTKESHKIQNDMCKAGTWLDQVPVNTIIQTVPQESIKKLQADVLPEYRRLAAKLIEHFIKEFKTQGGDDAKIREHFERMYKWQH