Scaffold JGI24003J15210_10028393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24003J15210_10028393

Scaffold JGI24003J15210_10028393

Overview

Basic Information
Taxon OID	3300001460 Open in IMG/M
Scaffold ID	JGI24003J15210_10028393 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2057
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071643	Metagenome	122	Y
F087751	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_100283931	F071643	N/A	VTRPEDDHMYWSSEASNFNTHAERVQFLKDNGITNLQRIDTILHLAVSFLPSRMYKLPRKLIIAAWRDLPNDTARTMFAIGIKSIKRKDST*
JGI24003J15210_100283934	F087751	AGGAG	MSIFKKKNDALQNANKMTGDEVIETYARLNLYQKAALLRLLVRDVIFNVNNEEVSGLNFTDIKVDGAIIVANEE*

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