Scaffold JGI24003J15210_10024691

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10024691
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2245
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013138	Metagenome / Metatranscriptome	274	N
F015799	Metagenome / Metatranscriptome	252	Y
F087777	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1002469110	F013138	N/A	QAINNYNTENFSVKDVKAANKRFYEKFPGAIEPAAMIKKAMQDPGDEVVKEQTRQENEMENFIGKINITGGIY*
JGI24003J15210_100246914	F087777	N/A	MLKNNGEDDYVATKVEKSFDDDGNTVVAELPKANKTSLNVIKQIGNDDVSSKAKDKFSVEKLLGSKQKPAKVINLNKKK*
JGI24003J15210_100246919	F015799	GGAGG	MTTTQKTTRTPVQYNSSGAAAGFGPQAHPPHMDAAAEKTIQDKTKGNSDFHGDNMAFIKKIKRG*