NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10023677

Scaffold JGI24003J15210_10023677


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10023677 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2308
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052939Metagenome142Y
F060425Metagenome133Y
F106097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_100236773F106097GGAGMNRQQMIDILLEENVNGDWTDNYYFEKDNIHIVWCSSLELWLMLDYKTFPKTFESSCTLEEAFKYTFADQLSDEGIKEFLNNREKNDE*
JGI24003J15210_100236774F060425GGAGMNSSKIIYAELKNGSTYKYLWLGNDHFADLYNSWDYEDNEGKYKGMLDFDHTISYTFDMDEIKDQHSIXGIDIEDGLEDGEIVDFTIRNIKWEKTI*
JGI24003J15210_100236776F052939AGGAMNIEQQILEQIFDTLMKNDYPENFNFATDLRYDHWLDYNEKNPETPTISLVVGKKGIPTKYEVSIREVV*

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