Scaffold JGI24003J15210_10018479

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10018479
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2686
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015990	Metagenome	250	N
F037256	Metagenome	168	Y
F054417	Metagenome	140	Y
F083372	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1001847910	F037256	GGAG	MSNKKEYIFSNTFTTTEETEVLANSYDEAVDIFLSGGGITHEVDTSGGNWECIQEPTDDEEQD*
JGI24003J15210_100184793	F015990	GGAG	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEIRNYVEKLHKEDKLVFLTTTTNA*
JGI24003J15210_100184795	F083372	AGGAG	MIMQQYKISYPRAEFCYAKHIRDNLKHEGEIIYPHQPSSRLLEDGSWLLLTITGERLGTVSPNGTVRLT*
JGI24003J15210_100184796	F054417	AGGAG	MSKFNKQKTIDKIIDDFGNCRMNSHWFPKSETQIEWSSHQEVYLILHQDKTWDYAEPKHLDMYVENLKDQDLKEYAKEQ*