Scaffold JGI24003J15210_10006467

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10006467
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4934
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000646710	F002768	GAG	MKNSWWKLTIEDYPNYKPNEIDLEHIAECIKQGYDQGELLQESEQDDEE*
JGI24003J15210_100064673	F004990	AGAAG	MELDDYFDPKKPCIICKKGADLREGNKYYCVDHYALYVLGKPMSQIEKELKE*
JGI24003J15210_100064675	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYANAITKIKKDRKGYFQAKDIKQQKKSLSTDRFQQYLKDIQENDTD*
JGI24003J15210_100064676	F004629	AGGA	MIPTKLTVDELDNYFQTATYVERYMPSPLNIKNKRTEMFYIIEKLYGIGKDKDSYKNQDKPRLRIRLNSEQIQIYEFCILLLVKANDKDRDIISLRNFPYKRSFRQLKRFFMPVSHEQVRIKYYNALYELLKLYHLKGRAYFLK*
JGI24003J15210_100064679	F005038	GAG	MKNKDINIYNLFSETYKKRKMFSFIGFGELSLMPKVDKPIRQISNVYQFPIKQYYNQKRRVK*