Scaffold JGI24003J15210_10006344

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10006344
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y
F028971	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000634413	F028971	GAGG	MIITKDTELTPMTKEEFRAWEEYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLDLRVDKEGQE*
JGI24003J15210_100063445	F010571	AGGAGG	MSNITTETYAEKLYEELYDKHYREVGKTTDDVDYIEREAERLALIDLDNFEMEG*
JGI24003J15210_100063446	F003976	GGAGG	MSRTYNDYYFEKEDVLHTLEKLEMSVRFLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEVDDE*
JGI24003J15210_100063447	F010318	AGGAGG	MSDWLDGTKPKIIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGTTSWYDGDEGETDYKWARYENVLDEDWNKVEGLN*