Scaffold JGI24003J15210_10005334

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10005334
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5473
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029471	Metagenome / Metatranscriptome	188	N
F041249	Metagenome	160	Y
F073589	Metagenome / Metatranscriptome	120	N
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000533410	F029471	AGGAG	MMSSELNQQDYSDSRLNDMEDVLDCVDMKAGVTSFFNTVISPFADHPDWSMLAEWNANSIIGVFQRHHEQCIKSLDKTKSLMQTALREDVGNEITKLNVDKLIFRRDAQEVNIKRADAILNEFKLCYEVTFGKKFMPQSKTPAKDVTKQMKEYNMTRLKEALGK*
JGI24003J15210_1000533416	F073589	AGGAG	MNYKVNIWQDDTLKREIVYSANNDIQAIQMASAATPDGCRATYEQMEEKCPTEKEPMVLKEEDLLRKAS*
JGI24003J15210_100053345	F041249	AGG	MTEDELLTSTNKRTRRNENTIKYGMFGLSLGERNYERLHNYCTKHNLYKATLVRSLVVDYLDRAEQKDDNV*
JGI24003J15210_100053348	F076607	N/A	MVQIMTKYKQHIIDKLAKLQFDYAECRIEMAEFISSITRLGVDSPGDIEEHRSNAEEARYDYKVSKHQNKF*