Scaffold JGI24003J15210_10004787

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10004787
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5800
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010571	Metagenome	302	Y
F010878	Metagenome / Metatranscriptome	298	Y
F035272	Metagenome / Metatranscriptome	172	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000478713	F010571	AGGAGG	MSNIITETYADKLYEELYEKHYEEVSKTTDDVGYIEREAERLALIDLDNFEMEG*
JGI24003J15210_1000478715	F035272	GGAGG	MTYKQWCNLRELLTTLNDEVDSKVCDDKVSEAFDDVWDMVDEIDXRQEIT*
JGI24003J15210_1000478716	F010878	AGGAG	MKITAWNIGIVWEDGTEENIGDVPDWVANRVDEFLNELEEEDDE*
JGI24003J15210_1000478723	F094102	GAGG	VKEDCKLTPMTKEEYRVWEDYVINYNHRNPTDQISYEVTFINNDIYEVKLLDLKVDREGEQ*