Scaffold JGI24003J15210_10002202

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10002202
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8567
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F008795	Metagenome	328	N
F026409	Metagenome	198	Y
F096201	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000220213	F006528	AGGA	MKDKEKHSIKDIEKLAIETFKNIIEGSRSINGVTWNKIKNLKRKDQIICLKQLSQ*
JGI24003J15210_1000220215	F008385	AGGAG	LVKTNIYLDYKICVKCGDPADVIESNKDYCCNCWFEKVNGKSFEEVDKQIKEEERFIKKK
JGI24003J15210_1000220216	F026409	N/A	MKYLIIFILLSSCSFSDYDFNPSTTVLKQLIKGAKND*
JGI24003J15210_1000220217	F008795	AGGAG	MIKVKLEANEVELALNIAAKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSD
JGI24003J15210_100022029	F096201	N/A	MKANQPKERRNTMNTYLITNNKNSLSYTKDFLNTSEARHWIINHLDLSNEWSINPVKKLHHTAYKKNYKNYILSTIEEDGEGKPLTSESEKISYIFDRFNSEYGFMIERVGKYKAMSEWLSGLSLNIEFYNDAIVDLAVKMGSIEPNPNDKMKDKVAANYWDFMANVILGFEPKKQVA*