Scaffold JGI24003J15210_10002117

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10002117
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8710
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F049295	Metagenome	147	N
F049997	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000211724	F049997	N/A	IPVSDMCDEHVRRAFKKLLRDVHEMTGKEAPLDGPAFHSIYVRVNGGMCRYERVTDKGQGV*
JGI24003J15210_100021173	F003020	AGGAG	MPDTSSFKSVSVSVGTHNQLKTLAENRFEVPVSIQKVIDFMLEKELKKKNGKSR*
JGI24003J15210_100021174	F004988	AGAAG	MVSLVETICPRCDGNGYIKVQKKELNCPQCEEKFMHMGGEVTTHNGYVMLPKDQTRINIEGGREAIHKKAKKL*
JGI24003J15210_100021177	F000720	GAGG	MTLIKENTRVRTEIPNRMMSATFALPIDGRRVVGIVNYTATETGLTPLAFWVKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPDKKQRMLSTDPYAMKE*
JGI24003J15210_100021179	F049295	N/A	MSDEIVVEWIPEDTGAPYEMDMKEVIIDTPSHVVDKWCKKKFGHTNWARMGVMSPEELIGNPHEFDFDEGIIYFKNAHLV*