Scaffold JGI24003J15210_10002065

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10002065
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8815
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003612	Metagenome	477	Y
F004488	Metagenome / Metatranscriptome	436	Y
F075971	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000206510	F004488	GAGG	MFKWFRRLSESYKKFLFDQYIPKPTVYKIGNKKYIKVKRLNTGTKAGRGPYIK*
JGI24003J15210_1000206515	F003612	GAGG	VATPNNFKVTTAIGETDNYIGADINFYHITLKDNSATAVDIRTELGYDETVHNVIRTVLDRGTMVHQRIDNASTGRIDIAMERAGWTAATLQTALRDLGDTVGVNDKDLRGTVVTETELKLDAS*
JGI24003J15210_100020657	F075971	N/A	MRKILLSCMMILLTMSVAKAKTIDYLVNGTPGGSMFDNAELFIPILEKETGFKINKIVVDSCVGASIYLKSSKNPTIWMQNTLAHEETGCDLQGTKKTFIGTAWGRAMAFCSNDELSVAVQKLNSGKRLTFAVSNSYGQHLIDPLAEVTGTPMKFVPYGSSGKSLKGFVAGDTDMLYTNMPKAVSGVTKNGISCWANTGPTKILDMEPMSKVFPDYKYNDLQTFTYLDSANLDSAELDKFRNAWISVLTSQGVLDKIKNKKLFHPDIYGDNPDWMTILDKAGKNWVGK*