Scaffold JGI24003J15210_10001842

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10001842
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9307
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006000	Metagenome / Metatranscriptome	384	Y
F006589	Metagenome / Metatranscriptome	369	Y
F050478	Metagenome	145	N
F067110	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000184219	F006589	GAGG	MLKELLEKQVNSIIDANELTDMQVWGCWCGIGFVCALIVIWII*
JGI24003J15210_1000184222	F006000	GGA	MMNQNARRVIRVTPTITGVTYGNNDILFDTMEIPLAVGKPGECSKLVSAMIISKSNDVFDAEIFFCQVNQTMGTVNAARNVSDADFAAAKVMGTLTLDGSADDYNYGGGRIFRFDRNQEGFAETAGDDMAKSRFPILLQAAAGTTSVYCFAFLAGTDVTPGFSVGDLELVLGVEY*
JGI24003J15210_100018424	F067110	AGGAG	MKGLLQTIVGEAVKKGYYYAIDSEEGYEFTDESFYQHPTQNLNLLCNQKPEDEYVGVDNLDECHIFFFTKEQADRLNNAVGKVDYDHEIWESEEEEENGRYSEGWILWSNWNEGIERVGDYTCNLDDLIGLSKITDEWEEKLEAFKHSL*
JGI24003J15210_100018425	F050478	GGAG	MKTTIKRVSKYTFDKDGHPINKRGKRLTNKITATFKHSPNNAGSRVDWIHFEKNENNT*