Scaffold JGI24003J15210_10001055

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10001055
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11997
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033811	Metagenome / Metatranscriptome	176	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N
F079390	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000105510	F033811	GGAG	MKLFCNIAVMETNIAQAFIEAIDYSHVKHIIRSNKSIKAYWGGVTPSIADLKRVIKNMWARVSKHESAEDCVNGIVMIKDGKKVRIDFLYLSYSSQMEESSQHSEEGCSQDSEREIKSS*
JGI24003J15210_1000105511	F061389	N/A	MWMTPGTIFILKTHEEREDIEIFLCEDPDEEGKEFWLSRGFVLGEFESDYKPKCWTEDLFLIV*
JGI24003J15210_1000105512	F066285	N/A	MDKKLWNVVYFNRPDVHKTLVWSDGKRYFDGFLGSDNSVYRKTSGTPVEEPNAVYWTEKPFNASDDQE*
JGI24003J15210_1000105514	F054452	N/A	MTDELKMSLLNELMFGLDVCNHEHHEEIMFLHDFGFVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN*
JGI24003J15210_1000105517	F079390	N/A	MDKPKNFKELKKRLLPFINYEQEVQLSKEAKVQNVGNMINSHVKILEANTGNAAYMPYYDRLVMLLTILETGWE*